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      "title": "Attach additive effects to population.",
      "topics": [
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    {
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      "title": "Attach epistatic network to population.",
      "topics": [
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      "title": "epinetr",
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      "topics": [
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    {
      "page": "getAddCoefs",
      "title": "Get additive coefficients.",
      "topics": [
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      "page": "getAddOffset",
      "title": "Retrieve additive offset.",
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      "page": "getAlleleFreqRun",
      "title": "Get allele frequencies.",
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      "title": "Get phenotypic components.",
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      "title": "Epistatic network retrieval.",
      "topics": [
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      "title": "Retrieve epistatic offset.",
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      "title": "Calculate epistatic interactions.",
      "topics": [
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      ]
    },
    {
      "page": "getGeno",
      "title": "Get population unphased genotypes.",
      "topics": [
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    },
    {
      "page": "getHaplo",
      "title": "Retrieve haplotypes.",
      "topics": [
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      "page": "getIncMatrix",
      "title": "Incidence matrix retrieval.",
      "topics": [
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    {
      "page": "getInteraction",
      "title": "Retrieve interaction values.",
      "topics": [
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    {
      "page": "getPedigree",
      "title": "Get population pedigree.",
      "topics": [
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    },
    {
      "page": "getPhased",
      "title": "Get population phased genotypes.",
      "topics": [
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    {
      "page": "getQTL",
      "title": "QTL retrieval.",
      "topics": [
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    {
      "page": "getSubPop",
      "title": "Get subpopulation",
      "topics": [
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    },
    {
      "page": "loadGeno",
      "title": "Load epinetr genotype file.",
      "topics": [
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    {
      "page": "map100snp",
      "title": "Example map.",
      "topics": [
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    },
    {
      "page": "plot.EpiNet",
      "title": "Plot epistatic network.",
      "topics": [
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    },
    {
      "page": "plot.Population",
      "title": "Plot phenotypic value for a population.",
      "topics": [
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    },
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      "title": "Population constructor.",
      "topics": [
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    },
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      "page": "print.Population",
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      "topics": [
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      "source": "epinetr-vignette.Rmd",
      "filename": "epinetr-vignette.html",
      "title": "Using the epinetr package",
      "author": "Dion Detterer, Paul Kwan, Cedric Gondro",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Constructing the initial population",
        "Constructing a population using a genotype matrix",
        "Modifying an existing population",
        "Attaching effects to the population",
        "Attaching an epistatic network to the population",
        "Supplying a user-defined network",
        "Creating purely epistatic QTL",
        "Calculating effects",
        "Inspecting additive, epistatic and environmental components",
        "Deriving additive and epistatic components",
        "Running the simulation",
        "Using the pedigree dropper",
        "Conclusion",
        "References"
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      "created": "2019-11-13 22:59:13",
      "modified": "2022-03-09 01:22:57",
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