Introduction | Constructing the initial population | Constructing a population using a genotype matrix | Modifying an existing population | Attaching effects to the population | Attaching an epistatic network to the population | Supplying a user-defined network | Creating purely epistatic QTL | Calculating effects | Inspecting additive, epistatic and environmental components | Deriving additive and epistatic components | Running the simulation | Using the pedigree dropper | Conclusion | References