Introduction | Constructing the initial population | Constructing a population using a genotype matrix | Modifying an existing population | Attaching effects to the population | Attaching an epistatic network to the population | Supplying a user-defined network | Creating purely epistatic QTL | Calculating effects | Inspecting additive, epistatic and environmental components | Deriving additive and epistatic components | Running the simulation | Using the pedigree dropper | Conclusion | References
Package: epinetr 0.96
epinetr: Epistatic Network Modelling with Forward-Time Simulation
Allows for forward-in-time simulation of epistatic networks with associated phenotypic output.
Authors:
epinetr_0.96.tar.gz
epinetr_0.96.zip(r-4.7-x86_64)epinetr_0.96.zip(r-4.7-arm64)epinetr_0.96.zip(r-4.6-x86_64)epinetr_0.96.zip(r-4.6-arm64)epinetr_0.96.zip(r-4.5-x86_64)
epinetr_0.96.tgz(r-4.6-x86_64)epinetr_0.96.tgz(r-4.6-arm64)epinetr_0.96.tgz(r-4.5-x86_64)epinetr_0.96.tgz(r-4.5-arm64)
epinetr_0.96.tar.gz(r-4.7-arm64)epinetr_0.96.tar.gz(r-4.7-x86_64)epinetr_0.96.tar.gz(r-4.6-arm64)epinetr_0.96.tar.gz(r-4.6-x86_64)
epinetr_0.96.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
epinetr/json (API)
| # Install 'epinetr' in R: |
| install.packages('epinetr', repos = c('https://diondetterer.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/diondetterer/epinetr/issues
Datasets:
- geno100snp - Example genotype matrix.
- map100snp - Example map.
- rincmat100snp - Example incidence matrix.
Last updated from:d1a4b6a5b4. Checks:13 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | NOTE | 143 | ||
| linux-devel-x86_64 | NOTE | 171 | ||
| source / vignettes | OK | 264 | ||
| linux-release-arm64 | NOTE | 145 | ||
| linux-release-x86_64 | NOTE | 145 | ||
| macos-release-arm64 | NOTE | 184 | ||
| macos-release-x86_64 | NOTE | 300 | ||
| macos-oldrel-arm64 | NOTE | 190 | ||
| macos-oldrel-x86_64 | NOTE | 402 | ||
| windows-devel-arm64 | NOTE | 336 | ||
| windows-devel-x86_64 | NOTE | 154 | ||
| windows-release-arm64 | NOTE | 345 | ||
| windows-release-x86_64 | NOTE | 120 | ||
| windows-oldrel-x86_64 | NOTE | 120 | ||
| wasm-release | OK | 149 |
Exports:addEffectsattachEpiNetgetAddCoefsgetAddOffsetgetAlleleFreqRungetComponentsgetEpiNetgetEpiOffsetgetEpistasisgetGenogetHaplogetIncMatrixgetInteractiongetPedigreegetPhasedgetQTLgetSubPoploadGenoPopulationrunSim
Dependencies:apecliclustercodetoolscpp11crayondigestdplyrfarverforeachGAgenericsggplot2gluegmpgtableigraphisobanditeratorslabelinglatticelifecyclemagrittrMASSMatrixmemusemgcvnlmepermutepillarpinfsc50pkgconfigplyrR6RColorBrewerRcppRcppAlgosRcppArmadilloreshape2rlangS7scalesstringistringrtibbletidyselectutf8vcfRvctrsveganviridisLitewithr
